Targeting the promoter regions of PDGF ligand and receptor

Aberrant expression of Platelet-derived growth factor A (PDGF-A) and PDGF receptor-beta (PDGFR-beta) play critical roles in the angiogenesis and proliferation of several malignancies. In this dissertation I explore the transcriptional regulatory role of the G-quadruplex-forming regions in the promoters of human PDGF-A and PDGFR-beta, and identify new targets for developing small molecules to modulate their expression in tumors. For PDGF-A promoter, our studies focus on two essential nuclease hypersensitive elements, NHEPDGF-A and 5'-end far upstream 5'-SHS. The structural aspects of the intramolecular G-quadruplexes formed in NHEPDGF-A and the ligands to stabilize these secondary DNA structures have been investigated by using single-stranded and duplex DNA of the NHEPDGF-A. We demonstrate that the G-quadruplex-interactive compound, TMPyP4, can selectively inhibit the basal promoter activity of PDGF-A, suggesting that the NHEPDGF-A G-quadruplex acts as a repressor in PDGF-A transcription. We also found that the 5'-SHS G-rich strand oligomer can invade the NHEPDGF-A and form a unique three-stranded complex in supercoiled plasmids, which is facilitated by potassium ions and TMPyP4. Therefore, we propose a novel molecular mechanism for transcriptional silencing of the NHEPDGF-A by 5'-SHS in the PDGF-A promoter, in that the formation of G-quadruplex in the NHE PDGF-A provides a platform for the G-rich strand of 5'-SHS to invade and form a partial duplex DNA with the C-rich strand of the NHEPDGF-A , resulting in displacement of hnRNP K and thus transcription silencing. Prior to the studies describe here, the promoter of human PDGFR-beta had not been identified. Herein, we have cloned and characterized the first functional promoter of human PDGFR-beta gene. A crucial highly GC-rich region (NHE PDGFR-beta) in the human PDGFR-beta promoter has been identified by its hypersensitivity to the S1 nuclease. Further studies demonstrate that stable G-quadruplex structures can form in the G-rich strand of NHEPDGFR-beta . The G-quadruplex-interactive molecule, telomestatin, can selectively stabilize G-quadruplexes formed in the human PDGFR-beta promoter and inhibit its expression in Daoy cells. On the basis of these results, we propose that ligand-mediated stabilization of the G-quadruplex structure in the proximal promoter region of human PDGF-A or PDGFR-beta can be used to modulate the expression of these proto-oncogenes.