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Bioinformatics and single nucleotide polymorphisms: In silico mapping of complex disease-related traits in mice

Posted on:2005-12-05Degree:Ph.DType:Dissertation
University:Stanford UniversityCandidate:Usuka, Jonathan AndrewFull Text:PDF
GTID:1454390008492733Subject:Chemistry
Abstract/Summary:
Experimental murine genetic models of complex human disease show great potential for understanding human disease pathogenesis. To reduce the time required for analysis of such models from many months down to milliseconds, a computational method for predicting chromosomal regions regulating phenotypic traits and a murine database of single nucleotide polymorphisms were developed. After entry of phenotypic information obtained from inbred mouse strains, the phenotypic and genotypic information is analyzed in silico to predict the chromosomal regions regulating the phenotypic trait. These computational predictions reproduce the results of genetic experiments utilizing intercross progeny which required months to years to perform in the laboratory.
Keywords/Search Tags:Single nucleotide polymorphisms, Human disease, Chromosomal regions regulating
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